Contacts
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Data Sources
Data included in theRING come from a variety of heterogeneous sources. Data sources may have been used for regulatory interactions and/or ontologies for naming convention and standardisaztion.
DB Name | sub DBs | Type | # sub DBs | Link |
---|---|---|---|---|
TcoF DB | BioGRID, IntAct, Reactome and MINT | co-TF | 1 | Link |
TargetMine | AMADEUS, OregAnno and HTRIdb | TF | 1 | Link |
tf2dna | tf2dna inferred, PScan-Jolma2013, Pscan-Mathelier2014, Pscan-Matys2006, Pscan-Scharer2009, Pscan-Weirauch2014, Pscan-Gerstein2012, Pscan-Berger2006, Pscan-Kulakovskiy2013, Pscan-Chen2011 | TF | 10 | Link |
TRRUST | -- | TF | 1 | Link |
KEGG | -- | GRN | 1 | Link |
Reactome | -- | PPI | 1 | Link |
Signor | -- | PPI | 1 | Link |
MINT | Mentha, IntAct, DIP, MPact, PPID and BioGRID | PPI | 6 | Link |
iRefIndex | BIND, BioGRID, CORUM, DIP, HPRD, InnateDB, IntAct, MatrixDB, MINT, MPact, MPIDB and MPPI | PPI | 12 | Link |
FisinGene | Reactome, Panther, CellMap, NCI Pathway Interaction DB, KEGG, IntAct, BioGRID, HPRD | PPI | 8 | Link |
miRTarBase | -- | miRNA-Target | 1 | Link |
miRWalk | -- | miRNA-Target | 1 | Link |
TargetScan | -- | miRNA-Target | 1 | Link |
miRIAD | -- | miRNA-Host | 1 | Link |
DisGeNET | -- | gene-disease and variant-disease associations (GDA, VDA) | 1 | Link |
Open Targets | -- | gene-disease associations (GDA) | 1 | Link |
PharmGKB | -- | gene-disease and gene-drug associations (GDA, GDD) | 1 | Link |
DGIdb | -- | gene-drug associations (GDD) | 1 | Link |
DrugBank | -- | drug-target association (DTA) | 1 | Link |
Stitch | -- | drug-target association (DTA) | 1 | Link |
NCBI Gene | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
Uniprot | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
miRBase | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
UCSC MySQL | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
Gene Ontology | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
ChEMBL | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
OMIM | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
STRING | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
UniChem | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
dbSNP | -- | Knowledge Base, Ontology and X-ref | 1 | Link |
Aknowledgement
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